學術論文

  • 期刊論文

  1. Ming-Ju Tsai, Jyun-Rong Wang, Chi-Dung Yang, Kuo-Ching Kao, Wen-Lin Huang, Hsi-Yuan Huang, Ching-Ping Tseng, Hsien-Da Huang, and Shinn-Ying Ho*. "PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coliPredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli." Scientific Reports (2017)

  2. Sathipati, Srinivasulu Yerukala, and Shinn-Ying Ho *. "Identifying the miRNA signature associated with survival time in patients with lung adenocarcinoma using miRNA expression profiles." Scientific Reports 7.1 (2017): 7507.

  3. Wang, J. R., Huang, W. L., Tsai, M. J., Hsu, K. T., Huang, H. L., & Ho, S. Y. (2016). ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives. Bioinformatics33(5), 661-668.

  4. Yerukala Sathipati Srinivasulu,  Hui-Ling Huang and Shinn-Ying Ho *, "Estimating survival time of patients with glioblastomamultiforme and characterization of the identified microRNA signatures", Accepted by BMC Genomics, 2016 December.

  5. Toma Vasylenko, Yi-Fan Liou,Po-Chin Chiou, Hsiao-Wei Chu, Yung-Sung Lai, Yu-Ling Chou, Hui-Ling Huang and Shinn-Ying Ho*, "SCMBYK: prediction and characterization of bacterial tyrosinekinases based on propensity scores of dipeptides", Accepted by BMC Bioinformatics, 2016 December.

  6. Yi-Fan Liou, Hui-Ling Huang, and Shinn-Ying Ho*, " A hydrophobic spine stabilizes a surface-exposed -helix according to analysis of the solvent-accessible surface area" Accepted by BMC Bioinformatics, 2016 December.

  7. Wen-Chin Weng, Hui-Ling Huang, Wong Lee Chin, Yuh-Jyh Jong, Yun-Ju Yin, Hong-An Chen, Wang-Tso Lee and Shinn-Ying Ho*, "Increased risks of tic disorders in children with epilepsy: A nation-wide population-based case–control study in Taiwan," Research in Developmental Disabilities, 2016 January.

  8. Wong Lee Chin, Hui-Ling Huang, Wen-Chin Weng, Yuh-Jyh Jong, Yun-Ju Yin, Hong-An Chen, Wang-Tso Lee and Shinn-Ying Ho*, "Increased risk of epilepsy in children with Tourette syndrome: A population-based case-control study," Research in Developmental Disabilities, 2016 January.

  9. Yih-Jing Tang, Shinn-Ying Ho, Fang-Ying Chu, Hung-An Chen, Yun-Ju Yin, Hua-Chin Lee, William Cheng-Chung Chu, Hui-Wen Yeh, Wei-Shan Chiang, Chia-Lun Yeh, Hui-Ling Huang* and Nian-Sheng Tzeng, "Is Zolpidem Associated with Increased Risk of Fractures in the Elderly with Sleep Disorders? A Nationwide Case Cross-Over Study in Taiwan," PLoS One, 2015 December 30; 10(12). (IF=3.057, Rank=11/63, SCI)

  10. Yi-Fan Liou , Toma VasyLenko, Chia-Lun Yeh, Wei-Chun Lin, Shih-Hsiang Chiu, Phasit Charoenkwan, Li-Sun Shu, Shinn-Ying Ho* and Hui-Ling Huang*, "SCMMTP: Identifying and characterizing membrane transport proteins using propensity scores of dipeptides," BMC Genomics, 2015 December; 16(Suppl 12):S6. (IF=3.986, Rank=26/163, SCI)

  11. Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Jyun-Rong Wang, Yi-Hsiung Chen and Shinn-Ying Ho*, " Prediction of linear B‐cell epitopes of hepatitis C virus for vaccine development," BMC Medical Genomics, 2015 December; 8(Supp l4):S3. (IF=2.873, Rank=69/167, SCI)

  12. Yerukala-Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu, Ming-Ju Tsai, Phasit Charoenkwan, Wen-Lin Huang, Hui-Ling Huang* and Shinn-Ying Ho*, " Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes," BMC Bioinformatics, 2015 December; 16(Suppl 18):S14. (IF=2.576, Rank=11/57, SCI)

  13. Shinn-Long Lin, Fang-Lin Chang, Shinn-Ying Ho, Phasit Charoenkwan, Kuan-Wei Wang and Hui-Ling Huang*, "Predicting Neuroinflammation in Morphine Tolerance for Tolerance Therapy from Immunostaining Images of Rat Spinal Cord," PLoS ONE, 2015 October; 10(10):e0139806. (IF=3.057, Rank=11/63, SCI)

  14. Chung-Wei Yang, Nian-Sheng Tzeng, Yun-Ju Yin, Chien-Hsun Li, Hong-An Chen, Shih-Hsiang Chiu, Shinn-Ying Ho* and Hui-Ling Huang*, "Angiotensin Receptor Blockers Decrease the Risk of Major Adverse Cardiovascular Events in Patients with End-Stage Renal Disease on Maintenance Dialysis: A Nationwide Matched-Cohort Study," PLoS ONE, 2015 October; 10(10):e0140633. (IF=3.057, Rank=11/63, SCI)

  15. Hsien-Yi Chiu†, Hui-Ling Huang†, Chien-Hsun Li, Yun-Ju Yin, Hong-An Chen, Shu-Ting Hsu, Sung-Jan Lin, Tsen-Fang Tsai* and Shinn-Ying Ho*, "Increased risk of glomerulonephritis and chronic kidney disease in relation to the severity of psoriasis, concomitant medication, and comorbidity: a nationwide population-based cohort study," British Journal of Dermatology, 2015 July; 173(1):146-154.

  16. Hsien-Yi Chiu †, Hui-Ling Huang †, Chien-Hsun Li, Hung-An Chen, Chia-Lun Yeh, Shih-Hsiang Chiu, Wei-Chun Lin, Yu-Pin Cheng, Tsen-Fang Tsai* and Shinn-Ying Ho*, "Increased Risk of Chronic Kidney Disease in Rheumatoid Arthritis Associated with Cardiovascular Complications - A National Population-Based Cohort Study," PLoS ONE, 2015 September 25; 10(9). (IF=3.057, Rank=11/63, SCI)

  17. Yi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang and Shinn-Ying Ho*, "GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes," Bioinformatics, 2015 July 1; 31(13):2151-2158. (IF=4.981, Rank=3/57, SCI)

  18. Chien-Ming Lin, Hui-Ling Huang, Fang-Ying Chu, Hueng-Chuen Fan, Hung-An Chen, Der-Ming Chu, Li-Wei Wu, Chung-Ching Wang, Wei-Liang Chen, Shih-Hua Lin and Shinn-Ying Ho*, "Association between Gastroenterological Malignancy and Diabetes Mellitus and Anti-Diabetic Therapy: A Nationwide, Population-Based Cohort Study," PLoS ONE, 2015 May 15; 10(5). (IF=3.057, Rank=11/63, SCI)

  19. Hui-Ling Huang*, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William Cheng-Chung Chu and Shinn-Ying Ho*, "Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival data," BMC Bioinformatics, 2015 February 21; 16. (IF=2.576, Rank=11/57, SCI)

  20. Tamara Vasylenko, Yi-Fan Liou, Hong-An Chen, Phasit Charoenkwan, Hui-Ling Huang* and Shinn-Ying Ho*, "SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method," BMC Bioinformatics, 2015 January 21; 16. (IF=2.576, Rank=11/57, SCI)

  21. Nian-Sheng Tzeng, Yung-Ho Hsu, Shinn-Ying Ho, Yu-Ching Kuo, Hua-Chin Lee, Yun-Ju Yin, Hong-An Chen, Wen-Liang Chen, William Cheng-Chung Chu and Hui-Ling Huang, "Is schizophrenia associated with an increased risk of chronic kidney disease? A nationwide matched-cohort study," BMJ Open, 2015 January 27; 5(1). (IF=2.271, Rank=40/154, SCI)

  22. Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamala Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Yi-Hsiung Chen, Hui-Ling Huang* and Shinn-Ying Ho*, "SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides," BMC Bioinformatics, 2014 December 8; 15. (IF=2.576, Rank=11/57, SCI)

  23. Chia-Lun Kuo, Chi-Yen Chen, Hui-Ling Huang, Wen-Liang Chen, Hua-Chin Lee, Chih-Yu Chang, Chu-Chung Chou, Shinn-Ying Ho*, Han-Ping Wu* and Yan-Ren Lin*, "Increased risk of major depression subsequent to a first-attack and non-infection caused urticaria in adolescence: a nationwide population-based study," BMC Pediatrics, 2014 July 11; 14. (IF=1.93, Rank=41/120, SCI)

  24. Hui-Ling Huang, Shinn-Ying Ho, Chien-Hsun Li, Fang-Ying Chu, Li-Ping Ciou, Hua-Chin Lee, Wen-Liang Chen and Nian-Sheng Tzeng*, "Bronchial asthma is associated with increased risk of chronic kidney disease," BMC Pulmonary Medicine, 2014 May 8; 14. (IF=2.404, Rank=31/58, SCI)

  25. Hui-Ling Huang, Ming-Che Li, Tamara Vasylenko and Shinn-Ying Ho, "Computational prediction and analysis of human transporters using physicochemical properties of amino acids," International Journal of Engineering and Technical Research, 2014 February; 2(2):180-187.

  26. Chih-Yu Chang**, Wen-Liang Chen**, Yi-Fan Liou, Chih-Chi Ke, Hua-Chin Lee, Hui-Ling Huang, Li-Ping Ciou, Chu-Chung Chou, Mei-Chueh Yang, Shinn-Ying Ho* and Yan-Ren Lin*, "Increased Risk of Major Depression in the Three Years following a Femoral Neck Fracture-A National Population-Based Follow-Up Study," PLoS ONE, 2014 March 13; 9(3). (IF=3.057, Rank=11/63, SCI)

  27. Wen-Lin Huang, Chun-Wei Tung, Chyn Liaw, Hui-Ling Huang and Shinn-Ying Ho*, "Rule-Based Knowledge Acquisition Method for Promoter Prediction in Human and Drosophila Species," The Scientific World Journal, 2014 January 29; 2014(14). (IF: 1.730, Rank=13/56, SCI)

  28. Phasit Charoenkwan, Eric Hwang, R. W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui- Ling Huang and Shinn-Ying Ho*, "HCS-Neurons: identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screening," BMC Bioinformatics, 2013 October 22; 14. (IF=2.576, Rank=11/57, SCI)

  29. Phasit Charoenkwan, Watshara Shoombuatong, Hua-Chin Lee, Jeerayut Chaijaruwanich, Hui-Ling Huang and Shinn-Ying Ho*, "SCMCRYS: Predicting Protein Crystallization Using an Ensemble Scoring Card Method with Estimating Propensity Scores of P-Collocated Amino Acid Pairs," PLoS ONE, 2013 September 3; 8(9). (IF=3.057, Rank=11/63, SCI)

  30. Chi-Lan Yang, Hua-Chin Lee, Chung-Chiang Chen, Tzyy-Ping Jung, Shinn-Ying Ho and Li-Wei Ko*, "Working Memory Performance and Brain Oscillations under Stress," Communications in Computer and Information Science (CCIS), Springer, 2013.

  31. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen and Shinn-Ying Ho*, "Predicting Television Ratings and Its Application to Taiwan Cable TV Channels," Proceedings of the 2nd International Symposium on Computer, Communication, Control and Automation, Atlantis Press, 2013 January; 68():189-193.

  32. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen and Shinn-Ying Ho*, "An Efficient Sampling Method for Television Ratings and its Application to Taiwan Cable TV Channels," Journal of Applied Sciences, 2013; 13(13):2602-2605.

  33. Hua-Chin Lee, Li-Wei Ko, Kuan-Lin Lai, Hui-Ling Huang, Meng-Shue Song, Wen-Liang Chen, Shuu-Jiun Wang* and Shinn-Ying Ho*, "Prediction of Resting- state EEG Using High-dimensional Patterns," Journal of Applied Mechanics and Materials (ISBN: 1662-7482), Trans Tech Publications, Switzerland, 2013 September; 421():528-533.

  34. Hui-ling Huang, Yi-fan Liou, Hua-chin Lee, Phasit Charoenkwan, Chao-di Chang, Yerukala Sathipati Srinivasulu, Wen-liang Chen, Tamara Vasylenko and Shinn-Ying Ho*, "Predicting and Analyzing Lipid-Binding Proteins Using an Efficient Physicochemical Property Mining Method," Journal of Applied Mechanics and Materials (ISBN: 1662-7482), Trans Tech Publications, Switzerland, 2013 September; 421():313-318.

  35. Wen-Lin Huang, Chyn Liaw, Chia-Ta Tsai and Shinn-Ying Ho*, "Identification and Analysis of Single- and Multiple-region Mitotic Protein Complexes by Grouping Gene Ontology Terms," Journal of Applied Mechanics and Materials (ISBN: 1662-7482), Trans Tech Publications, Switzerland, 2013 September; 421():277-285.

  36. Yu-Ting Liu, Hua-Chin Lee, Shinn-Ying Ho and Li-Wei Ko*, "An Evoked Oscillations Study in Scenario-compatible Stop-Signal Task," Journal of Neuroscience and Neuroengineering, 2013.

  37. Hui-Ling Huang, Fang-Lin Chang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang and Shinn-Ying Ho*, "FRKAS: Knowledge Acquisition Using a Fuzzy Rule Base Approach to Insight of DNA-Binding Domains/Proteins," Protein and Peptide Letters, 2013 March; 20(3):299-308. (IF=1.068, Ranking= 255/290, SCI)

  38. Chyn Liaw, Chun-Wei Tung and Shinn-Ying Ho*, "Prediction and Analysis of Antibody Amyloidogenesis from Sequences," PLoS ONE, 2013 January 7; 8(1). (IF=3.057, Rank=11/63, SCI)

  39. Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen and Shinn-Ying Ho*, "Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition," BMC Bioinformatics, 2012 December 13; 13. (IF=2.576, Rank=11/57, SCI)

  40. Hui-Ling Huang, Hua-Chin Lee, Yi-Fan Liou, Ming-Che Li and Shinn-Ying Ho*, "Designing predictors of carbohydrate-binding proteins using informative physicochemical properties " Bioinformatics and Biomedical Technology, 2012 29(155-160), ISBN 978-981-07-1471-0, IACSIT Press.

  41. Ching-Tai Chen, Hung-Pin Peng, Jhih-Wei Jian, Keng-Chang Tsai, Jeng-Yih Chang, Ei-Wen Yang, Jun-Bo Chen, Shinn-Ying Ho, Wen-Lian Hsu and An-Suei Yang*, "Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces," PLoS ONE, 2012 June 6; 7(6). (IF=3.057, Rank=11/63, SCI)

  42. Chun-Wei Tung, Matthias Ziehm, Andreas Kaemper, Oliver Kohlbacher* and Shinn-Ying Ho*, "POPISK: T-cell reactivity prediction using support vector machines and string kernels," BMC Bioinformatics, 2011 November 15; 12. (IF=2.576, Rank=11/57, SCI)

  43. Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tzai-Wen Chiu, Phasit Charoenkwan and Eric Hwang*, "NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery," BMC Bioinformatics, 2011 June 8; 12. (IF=2.576, Rank=11/57, SCI)

  44. Hui-Lin. Huang, I-Che. Lin, Yi-Fan. Liou, Chia-Ta. Tsai, Kai-Ti. Hsu, Wen-Lin. Huang, Shinn-Jang. Ho and Shinn-Ying Ho*, "Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties," BMC Bioinformatics, 2011 February 15; 12. (IF=2.576, Rank=11/57, SCI)

  45. Hsin-Nan Lin, Ting-Yi Sung, Shinn-Ying Ho and Wen-Lian Hsu*, "Improving protein secondary structure prediction based on short subsequences with local structure similarity," BMC Genomics, 2010 December 2; 11. (IF=4.014, Ranking=29/165, SCI)

  46. Chiung-Hui. Hung, Hui-Ling. Huang, Kai-Ti. Hsu, Shinn-Jang. Ho and Shinn-Ying Ho*, "Prediction of Non-classical Secreted Proteins Using Informative Physicochemical Properties," Interdisciplinary Sciences-Computational Life Sciences, 2010 September; 2(3):263-270.

  47. Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho and Wen-Lian Hsu*, "Protein subcellular localization prediction of eukaryotes using a knowledge-based approach," BMC Bioinformatics, 2009, 10. (IF=2.576, Rank=11/57, SCI)

  48. Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang and Shinn-Ying Ho*, "Predicting protein subnuclear localization using GO-amino-acid composition features," Biosystems, 2009 November; 98(2):73-79. (IF=1.472, Ranking=42/85, SCI) 

  49. Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju and Hsien-Da Huang*, "sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes," Nucleic Acids Research, 2009 January; 37(D150-D154). (IF=8.808, Ranking=22/291, SCI) 

  50. Chun-Wei Tung and Shinn-Ying Ho*, "Computational identification of ubiquitylation sites from protein sequences," BMC Bioinformatics, 2008 July 15; 9. (Highly accessed) (IF=2.576, Rank=11/57, SCI)

  51. Shinn-Ying Ho, Hung-Sui Lin, Weei-Hurng Liauh and Shinn-Jang Ho, "OPSO: Orthogonal particle swarm optimization and its application to task assignment problems," IEEE Transactions on Systems Man and Cybernetics Part a-Systems and Humans, 2008 March; 38(2):288-298. (IF=2.169, Ranking=4/24, SCI) 

  52. Ming-Hao Hung, Li-Sun Shu, Shinn-Jang Ho, Shiow-Fen Hwang and Shinn-Ying Ho*, "A novel intelligent multiobjective simulated annealing algorithm for designing robust PID controllers," IEEE Transactions on Systems Man and Cybernetics Part a-Systems and Humans, 2008 March; 38(2):319-330. (IF=2.169, Ranking=4/24, SCI) 

  53. Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang and Shinn-Ying Ho*, "ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization," BMC Bioinformatics, 2008 February 1; 9. (IF=2.576, Rank=11/57, SCI)

  54. Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang and Shinn-Ying Ho*, "Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method," Biosystems, 2007 September-October; 90(2):405-413. (IF=1.472, Ranking=42/85, SCI) 

  55. Shinn-Ying Ho*, Chih-Hung Hsieh, Fu-Chieh Yu and Hui-Ling Huang, "An intelligent two-stage evolutionary algorithm for dynamic pathway identification from gene expression profiles," IEEE-Acm Transactions on Computational Biology and Bioinformatics, 2007 October-December; 4(4):648-660. (IF=1.536, Ranking=24/119, SCI) 

  56. Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang and Shinn-Ying Ho*, "ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features," Biosystems, 2007 September-October; 90(2):573-581. (IF=1.472, Ranking=42/85, SCI) 

  57. Hui-Ling Huang, Chong-Cheng Lee and Shinn-Ying Ho*, "Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers," Biosystems, 2007 July-August; 90(1):78-86. (IF=1.472, Ranking=42/85, SCI) 

  58. Liang-Tsung Huang, M. Michael Gromiha and Shinn-Ying Ho*, "Sequence analysis and rule development of predicting protein stability change upon mutation using decision tree model," Journal of Molecular Modeling, 2007 August; 13(8):879-890. (IF=1.867, Ranking=28/102, SCI) 

  59. Shinn-Ying Ho*, Fu-Chieh Yu, Chia-Yun Chang and Hui-Ling Huang, "Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method," Biosystems, 2007 July-August; 90(1):234-241. (IF=1.472, Ranking=42/85, SCI) 

  60. Liang-Tsung Huang, M. Michael Gromiha* and Shinn-Ying Ho, "iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations," Bioinformatics, 2007 May 15; 23(10):1292-1293. (IF=4.981, Rank=3/57, SCI)

  61. Chun-Wei Tung and Shinn-Ying Ho*, "POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties," Bioinformatics, 2007 April 15; 23(8):942-949. (IF=4.981, Rank=3/57, SCI)

  62. Liang-Tsung Huang, K. Saraboji, Shinn-Ying Ho, Shiow-Fen Hwang, M.N. Ponnuswamy* and M. Michael Gromiha, "Prediction of protein mutant stability using classification and regression tool," Biophysical Chemistry, 2007 February; 125(2-3):462-470. (IF=2.319, Ranking=60/136, SCI) 

  63. Hung-Ming Chen, Bo-Fu Liu, Hui-Ling Huang, Shiow-Fen Hwang and Shinn-Ying Ho*, "SODOCK: Swarm optimization for highly flexible protein-ligand docking," Journal of Computational Chemistry, 2007 January 30; 28(2):612-623. (IF=3.601, Ranking=36/148, SCI) 

  64. H.-L. Huang, H.-M. Chen, S.-J. Ho, and Shinn-Ying Ho*, "Advanced Evolutionary Pursuit for Face Recognition," Journal of VLSI Signal Processing-Systems for Signal, Image, and Video Technology, 2006. (SCI, EI)

  65. Shinn-Ying Ho*, Chih-Hung Hsieh, Hung-Ming Chen and Hui-Ling Huang, "Interpretable gene expression classifier with an accurate and compact fuzzy rule base for microarray data analysis," Biosystems, 2006 September; 85(3):165-176. (IF=1.472, Ranking=42/85, SCI) 

  66. Liang-Tsung Huang, M.M. Gromiha, Shiow-Fen Hwang and Shinn-Ying Ho*, "Knowledge acquisition and development of accurate rules for predicting protein stability changes," Computational Biology and Chemistry, 2006 December; 30(6):408-415. (IF=1.591, Ranking=40/102, SCI) 

  67. Shinn-Jang Ho, Li-Sun Shu and Shinn-Ying Ho*, "Optimizing fuzzy neural networks, for tuning PID controllers using an orthogonal simulated annealing, algorithm OSA," IEEE Transactions on Fuzzy Systems, 2006 June; 14(3):421-434. (IF=6.306, Ranking=3/248, SCI) 

  68. Shinn-Ying Ho*, Chih-Hung Hsieh, Kuan-Wei Chen, Hui-Ling Huang, Hung-Ming Chen and Shinn-Jang Ho, "Scoring method for tumor prediction from microarray data using an evolutionary fuzzy classifier," Advances in Knowledge Discovery and Data Mining, Proceedings, 2006, 3918()520-529. (SCI, EI) 

  69. Shinn-Jang Ho*, Wen-Yuan Ku, Jun-Wun Jou, Ming-Hao Hung and Shinn-Ying Ho, "Intelligent particle swarm optimization in multi-objective problems," Advances in Knowledge Discovery and Data Mining, Proceedings, 2006 3918()790-800. (SCI, EI) 

  70. Shinn-Jang Ho, Shinn-Ying Ho*, Ming-Hao Hung, Li-Sun Shu and Hui-Ling Huang, "Designing structure-specified mixed H-2/H-infinity optimal controllers using an intelligent genetic algorithm IGA," IEEE Transactions on Control Systems Technology, 2005 November; 13(6):1119-1124. (IF=2.521, Ranking10/59, SCI) 

  71. Jian-Hung Chen, Hung-Ming Chen and Shinn-Ying Ho*, "Design of nearest neighbor classifiers: multi-objective approach," International Journal of Approximate Reasoning, 2005 July; 40(1-2):3-22. (SCI, EI) 

  72. Jian-Hung Chen and Shinn-Ying Ho*, "A novel approach to production planning of flexible manufacturing systems using an efficient multi-objective genetic algorithm," International Journal of Machine Tools & Manufacture, 2005 June; 45(7-8):949-957. (SCI, EI) 

  73. Kuang-Chyi Lee, Shinn-Jang Ho and Shinn-Ying Ho, "Accurate estimation of surface roughness from texture features of the surface image using an adaptive neuro-fuzzy inference system," Precision Engineering-Journal of the International Societies for Precision Engineering and Nanotechnology, 2005 January; 29(1):95-100. (SCI, EI) 

  74. Shinn-Ying Ho*, Li-Sun Shu and Jian-Hung Chen, "Intelligent evolutionary algorithms for large parameter optimization problems," IEEE Transactions on Evolutionary Computation, 2004 December; 8(6):522-541. (SCI, EI)(impact factor: 3.688, rank: 3/78, highly cited paper) 

  75. Shinn-Jang Ho, Shinn-Ying Ho* and Li-Sun Shu, "OSA: Orthogonal simulated annealing algorithm and its application to designing mixed H-2/H-infinity optimal controllers," IEEE Transactions on Systems Man and Cybernetics Part a-Systems and Humans, 2004 September; 34(5):588-600. (SCI, EI) 

  76. Shinn-Ying Ho*, Shinn-Jang Ho, Yi-Kuang Lin and W.C.-C. Chu, "An orthogonal simulated annealing algorithm for large floorplanning problems," IEEE Transactions on Very Large Scale Integration (Vlsi) Systems, 2004 August; 12(8):874-876. (SCI, EI) 

  77. Li-Sun Shu, Shinn-Ying Ho* and Shinn-Jang Ho, "A novel orthogonal simulated annealing algorithm for optimization of electromagnetic problems," IEEE Transactions on Magnetics, 2004 July; 40(4):1791-1795. (SCI, EI) 

  78. Shinn-Ying Ho*, Hung-Ming Chen, Shinn-Jang Ho and Tai-Kang Chen, "Design of accurate classifiers with a compact fuzzy-rule base using an evolutionary scatter partition of feature space," IEEE Transactions on Systems Man and Cybernetics Part B-Cybernetics, 2004 April; 34(2):1031-1044. (SCI, EI) 

  79. Shinn-Ying Ho*, Jian-Hung Chen and Meng-Hsun Huang, "Inheritable genetic algorithm for biobjective 0/1 combinatorial optimization problems and its applications," IEEE Transactions on Systems Man and Cybernetics Part B-Cybernetics, 2004 February; 34(1):609-620. (SCI, EI) 

  80. Jian-Hung Chen, Hung-Ming Chen and Shinn-Ying Ho*, "Design of nearest neighbor classifiers using an intelligent multi-objective evolutionary algorithm," Pricai 2004: Trends in Artificial Intelligence, Proceedings, 2004 August; 3157()262-271. (SCI, EI) 

  81. Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho*, Jian-Hung Chen and Ming-Hao Hung, "A novel multi-objective orthogonal simulated annealing algorithm for solving multi-objective optimization problems with a large number of parameters," Genetic and Evolutionary Computation - Gecco 2004, Pt 1, Proceedings, 2004 June; 3102()737-747. (SCI, EI) 

  82. Kual-Zheng Lee, Ting-Wei Liu and Shinn-Ying Ho*, "Model-based pose estimation of human motion using orthogonal simulated annealing," Intelligent Data Engineering and Automated Learning, 2003 August; 2690()983-991. (SCI, EI) 

  83. Kual-Zheng Lee, Wei-Che Chuang and Shinn-Ying Ho*, "A non-parametric image segmentation algorithm using an orthogonal experimental design based hill-climbing," Lecture Notes in Computer Science - Intelligent Data Engineering and Automated Learning, 2003 August; 2690()1076-1081. (SCI, EI) 

  84. Shinn-Ying Ho*, Shinn-Jang Ho and Tai-Kang Chen, "Design of high performance fuzzy controllers using flexible parameterized membership functions and intelligent genetic algorithms," Jsme International Journal Series C-Mechanical Systems Machine Elements and Manufacturing, 2003 March; 46(1):252-262. (SCI, EI) 

  85. Shinn-Ying Ho* and Kual-Zheng Lee, "Design and analysis of an efficient evolutionary image segmentation algorithm," Journal of Vlsi Signal Processing Systems for Signal Image and Video Technology, 2003 August; 35(1):29-42. (SCI, EI) 

  86. Hui-Ling Huang and Shinn-Ying Ho*, "Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm," Pattern Recognition, 2003 May; 36(5):1065-1081. (SCI, EI) 

  87. Shinn-Ying Ho* and Kual-Zheng Lee, "Genetic algorithm with intelligent crossover for colour quantization," Imaging Science Journal, 2003 July; 51(3):151-162. (SCI, EI) 

  88. Li-Sun Shu, Shinn-Jang Ho and Shinn-Ying Ho*, "A novel orthogonal simulated annealing algorithm for optimization of electromagnetic problems," Lecture Notes in Computer Science-Intelligent Data Engineering and Automated Learning, 2003; 2690()415-420. (SCI, EI) 

  89. Shinn-Ying Ho*, Kuang-Chyi Lee, Shih-Shin Chen and Shinn-Jang Ho, "Accurate modeling and prediction of surface roughness by computer vision in turning operations using an adaptive neuro-fuzzy inference system," International Journal of Machine Tools & Manufacture, 2002 October; 42(13):1441-1446. (SCI, EI) 

  90. Jian-Hung Chen and Shinn-Ying Ho*, "Intelligent Multi-Objective Evolutionary Algorithm for Editing Minimum Reference Set," Communication of Taiwan Institute of Information and Computation, 2002 May; 5()1-6.

  91. Shinn-Ying Ho*, Chia-Cheng Liu and Soundy Liu, "Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm," Pattern Recognition Letters, 2002 November; 23(13):1495-1503. (SCI, EI) 

  92. Shinn-Ying Ho* and Y.-C. Chen, "An Efficient Evolutionary Algorithm for Accurate Polygonal Approximation," Pattern Recognition, vol. 34, no. 12, pp. 2305-2317, Oct. 2001. (SCI, EI) 

  93. Shinn-Ying Ho* and H.-L. Huang, "Facial Modeling from an Uncalibrated Face Image Using Flexible Generic Parameterized Facial Models," IEEE Trans. Systems, Man, and Cybernetics─PartB, vol. 31, no. 5, pp. 706-719, Oct. 2001. (SCI, EI) 

  94. Shinn-Ying Ho* and H.-L. Huang, "Facial Modeling from an Uncalibrated Face Image Using a Coarse-to-Fine Genetic Algorithm," Pattern Recognition, vol. 34, no. 5, pp. 1015-1031, 2001. (SCI, EI) 

  95. Shinn-Ying Ho* and C.-C. Yang, "An Efficient Algorithm for the Design of a k-NNR Classifier," Journal of Feng Chia University, vol. 36, pp. 53-72, Dec. 1999.

  96. Shinn-Ying Ho* and H.-L. Huang, "An Analytic Solution for the Pose Determination of Human Faces from a Monocular Image," Pattern Recognition Letters, vol. 19, no. 11, pp. 1045-1054, Nov. 1998. (SCI, EI) Shinn-Ying Ho* and D.-H. Shi, "An Efficient Region-Based Algorithm for Detecting Human Faces in a Complex Background," Journal of Feng Chia University, vol. 33, pp. 135-156, June 1997.

  97. Shinn-Ying Ho* and J.-C. Hwang, "Polyhedral Recognition and Localization with Fast Library Search from a Monocular Image," Journal of Feng Chia University, vol. 31, pp. 151-170, June 1996.

  98. Z. Chen, T.-L. Chia, and Shinn-Ying Ho, "Measuring 3-D Location and Shape Parameters of Cylinders by a Spatial Encoding Technique," IEEE Trans. Robotics and Automation, vol. 10, no. 5, pp. 632-647, Sept. 1994. (SCI, EI) 

  99. Z. Chen, C.-M. Wang, and Shinn-Ying Ho, "An Effective Search Approach to Camera Parameter Estimation Using Arbitrary Planar Calibration Object," Pattern Recognition, vol. 26, no. 5, pp. 655-666, May 1992. (SCI, EI) 

  100. Z. Chen, Shinn-Ying Ho, and D.-C. Tseng, "Polyhedral Face Reconstruction and Modeling from a Single Image with Structured Light," IEEE Trans. Systems, Man, and Cybernetics, vol. 23, no. 3, pp. 864-872, May 1992. (SCI, EI) 

  101. Z. Chen and Shinn-Ying Ho, "Incremental Model Building of Polyhedral Objects Using Structured Light," Pattern Recognition, vol. 26, no. 1, pp. 33-46, Jan. 1992. (SCI, EI) 

  102. Z. Chen and Shinn-Ying Ho, "Computer Vision for Robust 3D Aircraft Recognition with Fast Library Search," Pattern Recognition, vol. 24, no. 5, pp. 375-390, May 1990. (SCI, EI) 

 

 

  • 專書著作
  1. Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, and Shinn-Ying Ho*, 「Prediction of Mouse Senescence From HE-Stain Liver Images Using An Ensemble SVM Classifier,」 Intelligent Information and Database Systems, Lecture Notes in Computer Science, Vol. 7803, pp. 325-334, ISBN 978-3-642-36542-3, Springer, 2013

 

  • 研討會論文
  1. Hua-Chin Lee, Li-Wei Ko*, Hui-Ling Huang, Jui-Yun Wu, Ya-Ting Chuang, Shinn-Ying Ho*, "Statistical Analysis and Classification of EEG-based Attention Network Task Using Optimized Feature Selection," presented at IEEE Symposium on Computational Intelligence, Cognitive Algorithms, Mind, and Brain (IEEE SSCI/CCMB 2014), Orlando, USA, December 9 - 12, 2014.
  2. Hui-Ling Huang, Hua-Chin Lee, Phasit Charoenkwan, Wen-Lin Huang, Li-Sun Shu and Shinn-Ying Ho, 「Interpretable knowledge acquisition for predicting bioluminescent proteins using an evolutionary fuzzy classifier method」, presented at The Eighth International Conference on Advanced Engineering Computing and Applications in Sciences (ADVCOMP 2014), Rome, Italy, August 24 - 28, 2014
  3. Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamala Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Y. H. Chen, Hui-Ling Huang* and Shinn-Ying Ho*, "SCMHBP: Prediction and analysis of heme binding proteins using propensity scores of dipeptides ", presented at International Conference on Bioinformatics 2014 (InCoB 2014), Sydney, Australia, July 31- August 2, 2014
  4. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho*, 「Predicting Television Ratings and Its Application to Taiwan Cable TV Channels,」 2nd International Symposium on Computer, Communication, Control and Automation (3CA 2013), 2013
  5. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho*, 「An Efficient Sampling Method for Television Ratings and Its Application to Taiwan Cable TV Channels,」 The 3rd International Conference on Computer Science and Logistics Engineering (ICCSLE2013), Hong Kong, 2013
  6. Phasit Charoenkwan, Eric Hwang, Robert W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang*, Shinn-Ying Ho*, 「HCS-Neurons: Identifying phenotypic changes in multi-neuron images upon drug treatments of highcontent screening,」 12th International Conference on Bioinformatics (InCoB 2013), Taicang, China, 2013
  7. Hua-Chin Lee ,Li-Wei Ko, Kuan-Lin Lai, Hui-Ling Huang, Meng-Shue Song, Wen-Liang Chen, Shuu-Jiun Wang, Shinn-Ying Ho*, 「Prediction of Resting-state EEG Using High-dimensional Patterns,」 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand, 2013
  8. Hui-ling Huang, Yi-fan Liou, Hua-chin Lee, Phasit Charoenkwan, Chao-di Chang, Yerukala Sathipati Srinivasulu, Wen-liang Chen, Tamara Vasylenko, Shinn-Ying Ho*, 「Predicting and Analyzing Lipid-Binding Proteins Using an Efficient Physicochemical Property Mining Method,」 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand, 2013
  9. Wen-Lin Huang, Chyn Liaw, Chia-Ta Tsai and Shinn-Ying Ho*, 「Identification and Analysis of Single- and Multiple-region Mitotic Protein Complexes by Grouping Gene Ontology Terms,」 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand, 2013
  10. Chi-Lan Yang**, Hua-Chin Lee**, Chung-Chiang Chen, Tzyy-Ping Jung, Shinn-Ying Ho, Li-Wei Ko*, 「Working Memory Performance and Brain Oscillations under Stress,」 15th International Conference on Human-Computer Interaction (HCI International 2013), Las Vegas, USA, 2013
  11. L.-W. Ko, H.-C. Lee, S.-F. Tsai, T.-C. Shih, Y.-T. Chuang, H.-L. Huang, Shinn-Ying Ho and C.-T. Lin, 「EEG-based Motion Sickness Classification system with Genetic Feature Selection,」 IEEE Symposium Series on Computational Intelligence 2013, April 16-19, Singapore, 2013
  12. Hui-Ling Huang, Phasit Charoenkwan, Y. S. Srinivasulu, Hua-Chin Lee and Shinn-Ying Ho*, 「Designing predictors of halophilic and non-halophilc proteins using support vector machines」, IEEE Symposium Series on Computational Intelligence 2013, April 16-19, Singapore, 2013
  13. W. Shoombuatong, Phasit Charoenkwan, Hui-Ling Huang, Hua-Chin Lee, J. Chaijaruwanich and Shinn-Ying Ho*, 「Predicting Protein Crystallization Using a Simple Scoring Card Method」, IEEE Symposium Series on Computational Intelligence 2013, April 16-19, Singapore, 2013
  14. Ching-Tai Chen, Hung-Pin Peng, Jhih-Wei Jian, Keng-Chang Tsai, Jeng-Yih Chang, Ei-Wen Yang, Jun-Bo Chen, Shinn-Ying Ho, Wen-Lian Hsu, An-Suei Yang*, "Protein-Protein Interaction Site Predictions with Three -Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces,」 The 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), March 18-20, Kuala Lumpur, Malaysia, 2013
  15. H.-L. Huang, M.-H. Hsu, H.-C. Lee, P. Charoenkwan, S.-J. Ho, Shinn-Ying Ho*, "Prediction of Mouse Senescence From HE-Stain Liver Images Using An Ensemble SVM Classifier,」 The 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), March 18-20, Kuala Lumpur, Malaysia, 2013
  16. Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen and Shinn-Ying Ho*, "Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition," 11th International Conference on Bioinformatics (InCoB 2012), Oct. 3-5, Thailand, 2012
  17. Chin-Teng Lin, Shu-Fang Tsai, Hua-Chin Lee, Hui-Ling Huang, Shinn-Ying Ho and Li-Wei Ko, "Motion Sickness Estimation System", IEEE International Joint Conference on Neural Networks (IJCNN 2012), June 10-15, Brisbane, Australia, 2012
  18. Hua-Chin Lee, Yi-Fan Liou, Phasit Charoenkwan, Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho, and Hui-Ling Huang, "Prediction of Carbohydrate-Binding Proteins Using a Scoring Card Method", IEEE International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2012), May 17-20, Shanghai, China, pp261-264, 2012.
  19. Hui-Ling Huang, Yi-Fan Liou, Hua-Chin Lee, Wen-Lin Huang, and Shinn-Ying Ho, "Designing predictors of bioluminescence proteins using an efficient physicochemical property mining method", IEEE International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2012), May 17-20, Shanghai, China, pp40-43, 2012.
  20. Hui-Ling Huang, Hua-Chin Lee, Yi-Fan Liou, Ming-Che Li, and Shinn-Ying Ho, 「Designing predictors of carbohydrate-binding proteins using informative physicochemical properties,」 International Conference on Bioinformatics and Biomedical Technology (ICBBT 2012), Feb. 26-28, Singapore, 2012
  21. Wen-Lin Huang, Chyn Liaw, Shinn-Ying Ho. Predicting non-classical secretory proteins by using Gene Ontology terms and physicochemical properties. IEEE International Conference on Computer Science and Automation Engineering - CSAE , 2011
  22. Interpretable knowledge acquisition for predicting DNA-binding domains using an evolutionary fuzzy classifier method. Hui-Ling Huang, Fang-Lin Chang, Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho. IEEE International Conference on Computer Science and Automation Engineering - CSAE , 2011
  23. Establishing large-scale gene regulatory networks using a gene-knowledge-embedded evolutionary computation method. Li-Sun Shu, Hui-Ling Huang, Shinn-Jang Ho, Shinn-Ying Ho. IEEE International Conference on Computer Science and Automation Engineering - CSAE , 2011
  24. H.-L. Huang, I-C. Lin, Y.-F. Liou, C.-T. Tsai, K.-T. Hsu, W.-L. Huang, S.-J. Ho, and Shinn-Ying Ho*, 「Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties, APBC 2011, Korea, Jan. 11-14, 2011.
  25. C. Liaw, C.-W. Tung, S.-J. Ho and Shinn-Ying Ho, Sequence-based Prediction Of Gamma-turn Types Using A Physicochemical Property-based Decision Tree Method, International Conference on Computational Biology, WASET 2010 Tokyo, Japan, May 26-28, 2010.
  26. C.-W. Tung, C. Liaw, S.-J. Ho and Shinn-Ying Ho, Prediction of protein subchloroplast locations using Random Forests, International Conference on Computational Biology, WASET 2010 Tokyo, Japan, May 26-28, 2010.
  27. Y.-J. Lin, H.-L. Huang, K.-T. Hsu, and Shinn-Ying Ho, 「Designing predictors of DNA-binding proteins using an efficient physicochemical property mining method,」 The 2nd International Conference on Computer and Automation Engineering (ICCAE2010), Singapore, Feb. 26-28, 2010.
  28. W-L Huang ,C-W Tung ,S-Y Ho, 」 Human Pol II promoter prediction by using nucleotide property composition features.」 The International Symposium on Biocomputing (ISB) Feb 15-16, Calicut, Kerala, India, 2010.
  29. Chiung-Hui Hung, Hui-Ling Huang, Kai-Ti Hsu, Shinn-Jang Ho and Shinn-Ying Ho, 」Prediction of non-classical secreted proteins using informative physicochemical properties." The International Conference on Computational and Systems Biology (ICBBA) October 9-11, Shanghai, China, 2009.
  30. K.-T. Hsu, H.-L. Huang, C.-W. Tung, Y.-H. Chen, and Shinn-Ying Ho, "Analysis of physicochemical properties on prediction of R5, X4 and R5X4 HIV-1 coreceptor usage," International Conference on Bioinformatics and Bioengineering (ICBB), May 27-29, Tokyo, Japan, 2009.
  31. C.-T. Tsai, W.-L. Huang, S.-J. Ho, L.-S. Shu, and Shinn-Ying Ho, "Virulent-GO: Prediction of virulent proteins inbacterial pathogens utilizing Gene Ontology terms," International Conference on Bioinformatics and Bioengineering (ICBB), May 27-29, Tokyo, Japan, 2009.
  32. W.-L. Huang, C.-W. Tung, S.-W. Ho, and Shinn-Ying Ho, "ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization," IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. (CIBCB). Sun Valley, Idaho, USA, 201-206, 2008.
  33. Y.-H. Chen and Shinn-Ying Ho, "GRNet: An efficient and robust evolutionary method for reconstructing gene regulatory networks," 18th International Conference on Genome Informatics, Biopolis, Singapore, 2007.
  34. S.-J. Ho, C.-Y. Chang, L.-T. Huang, S.-F. Hwang, and Shinn-Ying Ho, 「Acquisition of Rule-based Knowledge for Analyzing DNA-binding Sites in Proteins,」 In proc. of the 2nd International Conf. on Scalable Information Systems (INFOSCALE2007), Suzhou, China, 2007.
  35. C.-W. Tung and Shinn-Ying Ho, 2007, "Mining physicochemical properties for predicting immunogenicity of MHC class II binding peptides." 18th International Conference on Genome Informatics. Biopolis, Singapore.
  36. H.-L. Huang, Y.-H. Chen, D. D. Koeberl, and Shinn-Ying Ho, 2007, 「Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data,」 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, Honolulu, Hawaiii, April 1-5, 2007.
  37. S.-J. Ho, W.-Y. Ku, J.-W. Jou, M.-H. Hung, and Shinn-Ying Ho, "Intelligent Particle Swarm Optimization in Multi-objective Problems," The 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), Singapore, April 9-12, 2006.
  38. Shinn-Ying Ho, C.-H. Hsieh, K.-W. Chen, H.-L. Huang, H.-M. Chen, and Shinn-Ying Ho, "Scoring method for tumor prediction from microarray data using an evolutionary fuzzy classifier," The 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), Singapore, April 9-12, 2006.
  39. Shinn-Ying Ho, C.-Y. Chang, L.-T. Huang, W.-L. Huang, and S.-F. Hwang, 「Accurate prediction and analysis of DNA-binding proteins using a rule-based decision tree system,」 Proceedings of 12th International Conference on BioMedical Engineering: ICBME 2005, Singapore, p. 108, 2005.
  40. J.-H. Chen, D. E. Goldberg, and Shinn-Ying Ho, "Quality-time analysis of multi-objective evolutionary algorithms," in Proceeding of 2005 ACM SIG-EVO Genetic and Evolutionary Computation Conference (GECCO-2005), Loews L'Enfant Plaze Hotel, Washington, D.C., USA, 2005.
  41. H.-L. Huang and Shinn-Ying Ho, "Simultaneous Optimization of Gene Selection and Tumor Classification Using Intelligent Genetic Algorithm and Support Vector Machine," 2005 International Joint Conference of InCoB, AASBi and KSBI, Korea , Sep. 2005.
  42. Shinn-Ying Ho, C.-C. Lee, H.-M. Chen, and H.-L. Huang, 「Efficient gene selection for classification of microarray data,」 in Proceedings of Congress on Evolutionary Computation, UK, Edinburgh, pp. 642-649, 2005.
  43. B.-F. Liu, H.-M. Chen, H.-L. Huang, S.-F. Hwang, and Shinn-Ying Ho, "Flexible protein-ligand docking using particle swarm optimization," in Proceedings of the 2005 IEEE Congress on Evolutionary Computation, vol 1, pp.251-258, 2005.
  44. Shinn-Ying Ho, C.-H. Hsieh, F.-C. Yu and H.-L. Huang, "Evolutionary Divide-and-Conquer Approach to Inferring S-system Models of Genetic Networks," IEEE Proceedings of Congress on Evolutionary Computation CEC2005, vol. 1, pp. 691-698, Edinburgh, Sep. 2005,.
  45. B.-F. Liu, H.-M. Chen, J.-H. Chen, S.-F. Hwang, and Shinn-Ying Ho, "MeSwarm: memetic particle swarm optimization," Proceedings of the 2005 Genetic and Evolutionary Computation Conference, pp. 267-268, Washington, D.C. USA, Jun. 2005.
  46. Shinn-Ying Ho, C.-H. Hsieh, and F.-C. Yu, "Inference of S-system Models for Large-Scale Genetic Networks," Proceedings of the International Workshop on Biomedical Data Engineering, pp. 30-35, Tokyo, Japan, April 3-4, 2005.
  47. J.-H. Chen, H.-M. Chen, and Shinn-Ying Ho, "Design of Nearest Neighbor Classifiers Using an Intelligent Multi-Objective Evolutionary Algorithm," Proceedings of 8th Pacific Rim International Conference on Artificial Intelligence, pp. 262-271, Auckland, New Zealand, 2004.
  48. K.-Z. Lee, W.-C. Chuang, and Shinn-Ying Ho, "A Non-Parametric Image Segmentation Algorithm Using an Orthogonal Experimental Design Based Hill-Climbing," 4th International Conference, IDEAL 2003, LNCS 2690, pp. 1076-1081, Hong Kong, China, 2003.
  49. K.-Z. Lee, T.-W. Liu, and Shinn-Ying Ho, "Model-Based Pose Estimation of Human Motion Using Orthogonal Simulated Annealing," 4th International Conference, IDEAL 2003, LNCS 2690, pp. 983-991, Hong Kong, China, 2003.
  50. L.-S. Shu, S.-J. Ho, and Shinn-Ying Ho, "Novel Orthogonal Simulated Annealing Algorithm for Optimization of Electromagnetic Problems," 4th International Conference, IDEAL 2003, LNCS 2690, pp. 415-420, Hong Kong, China, 2003.
  51. J.-H. Chen, D.-E. Goldberg, Shinn-Ying Ho, and K. Sastry, "Fitness Inheritance in Multi-Objective Optimization," Proceedings of Genetic and Evolutionary Computation Conference, pp. 319-326, New York, USA, 2002.
  52. Shinn-Ying Ho, Z.-B. Huang, and S.-J. Ho, "An Evolutionary Approach for Pose Determination and Interpretation of Occluded Articulated Objects," Proceedings of Congress on Evolutionary Computation, pp. 1092-1097, Honolulu, USA, 2002.
  53. Shinn-Ying Ho, C.-C. Liu, S. Liu, and J.-W. Jou, "Design of an Optimal Nearest Neighbor Classifier Using an Intelligent Genetic Algorithm," Proceedings of Congress on Evolutionary Computation, pp. 594-599, Honolulu, USA, 2002.
  54. Shinn-Ying Ho, T.-K. Chen, and S.-J. Ho, "Design of High Performance Fuzzy Controllers Using Flexible Parameterized Membership Functions and Intelligent Genetic Algorithms," Proceedings of Congress on Evolutionary Computation, pp. 1378-1383, Honolulu, USA, 2002.
  55. J.-H. Chen and Shinn-Ying Ho, "Multi-Objective Evolutionary Optimization of Flexible Manufacturing Systems," Proceedings of Genetic and Evolutionary Computation Conference, pp. 1260-1267, San Francisco, California, USA, 2001.
  56. H.-M. Chen and Shinn-Ying Ho, "Designing an Optimal Evolutionary Fuzzy Decision Tree for Data Mining," Proceedings of Genetic and Evolutionary Computation Conference, pp. 943-950, San Francisco, California, USA, 2001.
  57. H.-L. Huang and Shinn-Ying Ho, "Mesh Optimization for Surface Approximation Using a Coarse-to-Fine Evolutionary Algorithm," Proceedings of Congress on Evolutionary Computation, pp. 584-591, Seoul, Korea, 2001.
  58. Shinn-Ying Ho and K.-Z. Lee, "An Efficient Evolutionary Image Segmentation Algorithm," Proceedings of Congress on Evolutionary Computation, pp. 1327-1334, Seoul, Korea, 2001.
  59. T.-K. Chen, Shinn-Ying Ho, and S.-J. Ho, "Design an Efficient Fuzzy Classifier Using an Intelligent Genetic Algorithm," Proceedings of IEEE International Computer Software and Application Conference (COMPSAC2000), pp. 293-298, Taipei, Taiwan, 2000.
  60. H.-L. Huang and Shinn-Ying Ho, "Mesh Optimization for Surface Approximation Using an Genetic Algorithm with a 2D Orthogonal Array Crossover," Proceedings of International Computer Symposium, pp. 109-116, Chiayi, Taiwan, 2000.
  61. Shinn-Ying Ho and K.-Z. Lee, "A Simple and Fast GA-SA Hybrid Image Segmentation Algorithm," Proceedings of Genetic and Evolutionary Computation Conference, pp. 718-725, Las Vegas, USA, 2000.
  62. Shinn-Ying Ho and M.-H. Huang, "An Efficient Quadratic Curve Approximation Using an Intelligent Genetic Algorithm," Proceedings of Genetic and Evolutionary Computation Conference, p. 766, Las Vegas, USA, 2000.
  63. Shinn-Ying Ho and K.-Z. Lee, "Efficient Image Segmentation Using a Generic and Non-Parametric Approach," Proceedings of The Fourth International Conference/Exhibition on High Performance Computing in Asia-Pacific Region, pp. 777-782, Beijing, China, 2000.
  64. Shinn-Ying Ho and J.-H. Chen, "A GA-Based Systematic Reasoning Approach for Solving Traveling Salesman Problems Using an Orthogonal Array-based Crossover," Proceedings of The Fourth International Conference/Exhibition on High Performance Computing in Asia-Pacific Region, pp. 659-663, Beijing, China, 2000.
  65. Shinn-Ying Ho and X.-I Chang, "An Efficient Generalized Multiobjective Evolutionary Algorithms," Proceedings of Genetic and Evolutionary Computation Conference, pp. 871-878, Orlando, Florida, USA, 1999.
  66. Shinn-Ying Ho, L.-S. Shu, and H.-M. Chen, "Intelligent Genetic Algorithm with a New Intelligent Crossover Using Orthogonal Arrays," Proceedings of Genetic and Evolutionary Computation Conference, pp. 289-296, Orlando, Florida, USA, 1999.
  67. Shinn-Ying Ho, H.-M. Chen, and L.-S. Shu, "Solving Large Knowledge Base Partitioning Problems Using an Intelligent Genetic Algorithm," Proceedings of Genetic and Evolutionary Computation Conference, pp. 1567-1572, Orlando, Florida, USA, 1999.
  68. Shinn-Ying Ho, L.-S. Shu, and H.-L. Huang, "An Efficient Texture Mapping Algorithm Based on Divided-Difference Interpolation," Proceedings of International Conference CSTIA, pp. 254-260, Hsinchu, Taiwan, 1997.
  69. Shinn-Ying Ho and Z. Chen, "An Efficient 3-D Object Recognition Algorithm for a Large Set of Polyhedra from a Single Arbitrary Multiple-Object View," Proceedings of International Computer Symposium, pp. 925-932, Taichung, Taiwan, 1992.
  70. Shinn-Ying Ho and Z. Chen, "An Efficient Algorithm for Aircraft Recognition Based on Fourier Descriptors," Proceedings of International Computer Symposium, pp. 324-332, Taiwan, 1986.

 

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