期刊論文

  1. Yerukala Sathipati Srinivasulu, Shinn-Ying Ho* (2018, Oct). Identifying a miRNA signature for predicting the stage of breast cancer. Scientific Reports 8, Article number: 16138. (SCI). 本人為通訊作者.
  2. Divya Sahu, Shinn-Ying Ho, Hsueh-Fen Juan, Hsuan-Cheng Huang. (2018, Jun). High-risk, Expression-based Prognostic long noncoding RNA Signature in Neuroblastoma.. JNCI Cancer Spectrum, Volume 2, Issue
  3. Papangkorn Inkeaw, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich (2018, Jun). Recognition-based character segmentation for multi-level writing style. International Journal on Document Analysis and Recognition (IJDAR), Volume 21, Issue 1–2, pp 21–39. (SCI, 85/132,COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE).
  4. Ming-Ju Tsai, Jyun-Rong Wang, Chi-Dung Yang, Kuo-Ching Kao, Wen-Lin Huang, Hsi-Yuan Huang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho* (2018, Jan). PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli.. Scientific Reports 8, Article number: 951. (SCI, 12/64, MULTIDISCIPLINARY SCIENCES). 本人為通訊作者.
  5. Wei-Hsiang Lee, Hui-Mei Chen, Shun-Fa Yang, Chao Liang, Chih-Yu Peng, Feng-Mao Lin, Lo-Lin Tsai, Buor-Chang Wu, Chung-Han Hsin, Chun-Yi Chuang, Ting Yang, Tzu-Ling Yang, Shinn-Ying Ho, Wen-Liang Chen, Kwo-Chang Ueng, Hsien-Da Huang, Chien-Ning Huang & Yuh-Jyh Jong (2017, Nov). Bacterial alterations in salivary microbiota and their association in oral cancer. Scientific Reports, Article number: 16540. (SCI, 12/64, MULTIDISCIPLINARY SCIENCES).
  6. Yerukala Sathipati Srinivasulu, Shinn-Ying Ho* (2017, Aug). Identifying the miRNA signature associated with survival time in patients with lung adenocarcinoma using miRNA expression profiles.. Scientific Reports 7, Article number: 7507. (SCI, 12/64, MULTIDISCIPLINARY SCIENCES). 本人為通訊作者.
  7. Toma Vasylenko, Yi-Fan Liou,Po-Chin Chiou, Hsiao-Wei Chu, Yung-Sung Lai, Yu-Ling Chou, Hui-Ling Huang and Shinn-Ying Ho* (2016, Dec). SCMBYK: prediction and characterization of bacterial tyrosinekinases based on propensity scores of dipeptides. BMC Bioinformatics, 17 (Suppl 19) :514. (SCI, 10/57, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  8. Yerukala Sathipati Srinivasulu, Hui-Ling Huang and Shinn-Ying Ho * (2016, Dec). Estimating survival time of patients with glioblastomamultiforme and characterization of the identified microRNA signatures. BMC Genomics, 17(Suppl 13): 1022. (SCI, 35/160, BIOTECHNOLOGY & APPLIED MICROBIOLOGY). 本人為通訊作者.
  9. Yi-Fan Liou, Hui-Ling Huang, and Shinn-Ying Ho* (2016, Dec). A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area. BMC Bioinformatics, 17(Suppl 19): 503.. (SCI, 10/57, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  10. Jyun-Rong Wang, Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Hui-Ling Huang, Shinn-Ying Ho* (2016, Nov). ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives. Bioinformatics, Volume 33, Issue 5, 1 March 2017, Pages 661–668. (SCI, 4/78, BIOCHEMICAL RESEARCH METHODS). 本人為通訊作者.
  11. Divya Sahu, Chia-Lang Hsu, Chen-Ching Lin, Tz-Wen Yang, Wen-Ming Hsu, Shinn-Ying Ho, Hsueh-Fen Juan, and Hsuan-Cheng Huang. (2016, Sep). Co-expression analysis identifies long noncoding RNA SNHG1 as a novel predictor for event-free survival in neuroblastoma. Oncotarget, 7(36): 58022–58037.. (SCI, 44/217, ONCOLOGY).
  12. Wong Lee Chin, Hui-Ling Huang, Wen-Chin Weng, Yuh-Jyh Jong, Yun-Ju Yin, Hong-An Chen, Wang-Tso Lee and Shinn-Ying Ho* (2016, Jan). Increased risk of epilepsy in children with Tourette syndrome: A population-based case-control study. Research in Developmental Disabilities, Volumes 51–52,Pages 181-187. (SCI, 8/38, EDUCATION, SPECIAL). 本人為通訊作者.
  13. Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Jyun-Rong Wang, Yi-Hsiung Chen, and Shinn-Ying Ho* (2015, Dec). Prediction of linear B‐cell epitopes of hepatitis C virus for vaccine development. BMC Medical Genomics, 8(Supp l4):S3. (SCI, 74/166, GENETICS & HEREDITY). 本人為通訊作者.
  14. Yerukala-Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu, Ming-Ju Tsai, Phasit Charoenkwan, Wen-Lin Huang, Hui-Ling Huang*, and Shinn-Ying Ho* (2015, Dec). Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes. BMC Bioinformatics, 16(Suppl 18):S (SCI, 10/56, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  15. Yi-Fan Liou , Toma VasyLenko, Chia-Lun Yeh, Wei-Chun Lin, Shih-Hsiang Chiu, Phasit Charoenkwan, Li-Sun Shu, Shinn-Ying Ho*, and Hui-Ling Huang* (2015, Dec). SCMMTP: Identifying and characterizing membrane transport proteins using propensity scores of dipeptides. BMC Genomics , 16(Suppl 12):S6. (SCI, 32/161, BIOTECHNOLOGY & APPLIED MICROBIOLOGY). 本人為通訊作者.
  16. Yih-Jing Tang*, Shinn-Ying Ho*, Fang-Ying Chu, Hung-An Chen, Yun-Ju Yin, Hua-Chin Lee, William Cheng-Chung Chu, Hui-Wen Yeh, Wei-Shan Chiang, Chia-Lun Yeh, Hui-Ling Huang, Nian-Sheng Tzeng (2015, Dec). Is Zolpidem Associated with Increased Risk of Fractures in the Elderly with Sleep Disorders? A Nationwide Case Cross-Over Study in Taiwan. PLoS One, 10(12). (SCI, 15/64, MULTIDISCIPLINARY SCIENCES). 本人為第一作者.
  17. Wen-Chin Weng, Hui-Ling Huang, Wong Lee Chin, Yuh-Jyh Jong, Yun-Ju Yin, Hong-An Chen, Wang-Tso Lee and Shinn-Ying Ho* (2015, Nov). Increased risks of tic disorders in children with epilepsy: A nation-wide population-based case–control study in Taiwan. Research in Developmental Disabilities, Volumes 51–52, April–May 2016, Pages 173-180. (SCI, 8/38, EDUCATION, SPECIAL). 本人為通訊作者.
  18. Chung-Wei Yang, Nian-Sheng Tzeng, Yun-Ju Yin, Chien-Hsun Li, Hong-An Chen, Shih-Hsiang Chiu, Shinn-Ying Ho*, Hui-Ling Huang* (2015, Oct). Angiotensin Receptor Blockers Decrease the Risk of Major Adverse Cardiovascular Events in Patients with End-stage Renal Disease on Maintenance Dialysis: A Nationwide Matched-cohort Study. PLoS ONE, 10(10):e0140633. (SCI, 15/64, MULTIDISCIPLINARY SCIENCES). 本人為通訊作者.
  19. Shinn-Long Lin, Fang-Lin Chang, Shinn-Ying Ho, Phasit Charoenkwan, Kuan-Wei Wang, Hui-Ling Huang* (2015, Oct). Predicting Neuroinflammation in Morphine Tolerance for Tolerance Therapy from Immunostaining Images of Rat Spinal Cord. PLoS ONE, 10(10):e0139806. (SCI, 15/64, MULTIDISCIPLINARY SCIENCES).
  20. Hsien-Yi Chiu†, Hui-Ling Huang†, Chien-Hsun Li, Hung-An Chen, Tsen-Fang Tsai* and Shinn-Ying Ho* (2015, Sep). Increased Risk of Chronic Kidney Disease in Rheumatoid arthritis Associated with Cardiovascular complications—A national Population-Based cohort study. PLOS ONE, 10(9): e0136508. (SCI, 15/64, MULTIDISCIPLINARY SCIENCES). 本人為通訊作者.
  21. Hsien-Yi Chiu†, Hui-Ling Huang†, Chien-Hsun Li, Yun-Ju Yin, Hong-An Chen, Shu-Ting Hsu, Sung-Jan Lin, Tsen-Fang Tsai*, and Shinn-Ying Ho* (2015, Jul). Increased risk of glomerulonephritis and chronic kidney disease in relation to the severity of psoriasis, concomitant medication, and comorbidity: a nationwide population-based cohort study. British Journal of Dermatology, Vol. 173, Issue 1, pp. 146–154. (SCI, 5/63, DERMATOLOGY). 本人為通訊作者.
  22. Yi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho* (2015, Jul). GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. Bioinformatics, 31(13):2151-2158. (SCI, 4/52, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  23. Chien-Ming Lin, Hui-Ling Huang, Fang-Ying Chu, Hueng-Chuen Fan, Hung-An Chen, Der-Ming Chu, Li-Wei Wu, Chung-Ching Wang, Wei-Liang Chen, Shih-Hua Lin, Shinn-Ying Ho* (2015, May). Association between Gastroenterological Malignancy and Diabetes Mellitus and Anti-Diabetic Therapy: A Nationwide, Population-Based Cohort Study. PLoS ONE, 10(5): e0125421. (SCI, 15/64, MULTIDISCIPLINARY SCIENCES). 本人為通訊作者.
  24. Hui-Ling Huang, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William Cheng-Chung Chu and Shinn-Ying Ho* (2015, Feb). Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival data. BMC Bioinformatics, 16:54. (SCI, 8/52, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  25. Nian-Sheng Tzeng, Yung-Ho Hsu, Shinn-Ying Ho, Yu-Ching Kuo, Hua-Chin Lee, Yun-Ju Yin, Hong-An Chen, Wen-Liang Chen, William Cheng-Chung Chu, Hui-Ling Huang (2015, Jan). Is schizophrenia associated with an increased risk of chronic kidney disease? A nationwide matched-cohort study. BMJ Open, 5(1):e006777. (SCI, 40/154, MEDICINE, GENERAL & INTERNAL).
  26. Tamara Vasylenko, Yi-Fan Liou, Hong-An Chen, Phasit Charoenkwan, Hui-Ling Huang* and Shinn-Ying Ho* (2015, Jan). SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method. BMC Bioinformatics, 16(Suppl 1):S8. (SCI, 11/57, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  27. Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamala Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Y. H. Chen, Hui-Ling Huang* and Shinn-Ying Ho* (2014, Dec). SCMHBP: Prediction and analysis of heme binding proteins using propensity scores of dipeptides. BMC Bioinformatics, 15 Suppl 16:S4. (SCI, 11/57, MATHEMATICAL & COMPUTATIONAL BIOLOGY). MOST 103-2221-E-009-117. 本人為通訊作者.
  28. Chia-Lun Kuo, Chi-Yen Chen, Hui-Ling Huang, Wen-Liang Chen, Hua-Chin Lee, Chih-Yu Chang, Chu-Chung Chou, Shinn-Ying Ho*, Han-Ping Wu*, Yan-Ren Lin* (2014, Jul). Increased risk of major depression subsequent to a first-attack and non-infection caused urticaria in adolescence: A nationwide population-based study. BMC Pediatrics, 14(1):181. (SCI, 41/120, PEDIATRICS). NSC 102-2314-B-371-010. 本人為通訊作者.
  29. Hui-Ling Huang, Shinn-Ying Ho, Chien-Hsun Li, Fang-Ying Chu, Li-Ping Ciou, Hua-Chin Lee, Wen-Liang Chen, Nian-Sheng Tzeng* (2014, May). Bronchial asthma is associated with increased risk of chronic kidney disease. BMC Pulmonary Medicine, 14(1):80. (SCI, 31/58, RESPIRATORY SYSTEM). MOST 101-2627-B-009-003.
  30. Chih-Yu Chang**, Wen-Liang Chen**, Yi-Fan Liou, Chih-Chi Ke, Hua-Chin Lee, Hui-Ling Huang, Li-Ping Ciou, Chu-Chung Chou, Mei-Chueh Yang, Shinn-Ying Ho* and Yan-Ren Lin* (2014, Mar). Increased Risk of Major Depression in the Three Years following a Femoral Neck Fracture-A National Population-Based Follow-Up Study. PLoS ONE, 9(3):e89867. (SCI, 9/57, MULTIDISCIPLINARY SCIENCES). MOST 102-2314-B-371-010. 本人為通訊作者.
  31. Hui-Ling Huang, Ming-Che Li, Tamara Vasylenko, Shinn-Ying Ho (2014, Feb). Computational prediction and analysis of human transporters using physicochemical properties of amino acids. international journal of engineering and technical research, 2(2):180-187. 本人為通訊作者.
  32. Wen-Lin Huang, Chun-Wei Tung, Chyn Liaw, Hui-Ling Huang, and Shinn-Ying Ho* (2014, Jan). Rule-based knowledge acquisition method for promoter prediction in human and drosophila species. The Scientific World Journal, 2014(14). (SCI, 13/56, MULTIDISCIPLINARY SCIENCES). NSC 102-2627-B-009-003. 本人為通訊作者.
  33. Phasit Charoenkwan, Eric Hwang, R. W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang, and Shinn-Ying Ho* (2013, Oct). HCS-Neurons: Identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screening. BMC Bioinformatics, 14(Suppl 16):S12. (SCI, 11/57, MATHEMATICAL & COMPUTATIONAL BIOLOGY). NSC 101-2627-B-009-003. 本人為通訊作者.
  34. Phasit Charoenkwan, Watshara Shoombuatong, Hua-Chin Lee, Jeerayut Chaijaruwanich, Hui-Ling Huang,and Shinn-Ying Ho* (2013, Sep). SCMCRYS: Predicting Protein Crystallization Using an Ensemble Scoring Card Method with Estimating Propensity Scores of P-Collocated Amino Acid Pairs. PloS ONE, 8(9), e72368. (SCI, 9/57, MULTIDISCIPLINARY SCIENCES). NSC 101-2627-B-009-003. 本人為通訊作者.
  35. Chi-Lan Yang**, Hua-Chin Lee**, Chung-Chiang Chen, Tzyy-Ping Jung, Shinn- Ying Ho, Li-Wei Ko* (2013, Aug). Working Memory Performance and Brain Oscillations under Stress. Communications in Computer and Information Science (CCIS) (ISBN: 1865-0929).
  36. Hua-Chin Lee, Li-Wei Ko, Kuan-Lin Lai, Hui-Ling Huang, Meng-Shue Song, Wen-Liang Chen, Shuu-Jiun Wang* and Shinn-Ying Ho* (2013, Aug). Prediction of Resting- state EEG Using High-dimensional Patterns. Journal of Applied Mechanics and Materials, 421, 528-533. 本人為通訊作者.
  37. Hui-ling Huang, Yi-fan Liou, Hua-chin Lee, Phasit Charoenkwan,Chao-di Chang, Yerukala Sathipati Srinivasulu, Wen-liang Chen, Tamara Vasylenko, Shinn-Ying Ho* (2013, Aug). Predicting and Analyzing Lipid-Binding Proteins Using an Efficient Physicochemical Property Mining Method. Journal of Applied Mechanics and Materials, 421, 313-318. 本人為通訊作者.
  38. Wen-Lin Huang, Chyn Liaw, Chia-Ta Tsai and Shinn-Ying Ho* (2013, Aug). Identification and Analysis of Single- and Multiple-region Mitotic Protein Complexes by Grouping Gene Ontology Terms. Journal of Applied Mechanics and Materials, 421, 277-285. 本人為通訊作者.
  39. Y. T. Liu, Hua-Chin Lee, Shinn-Ying Ho, Li-Wei Ko* (2013, Aug). An Evoked Oscillations Study in Scenario-compatible Stop-Signal Task. Journal of Neuroscience and Neuroengineering. 本人為通訊作者.
  40. Hui-Ling Huang, Fang-Lin Chang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang and Shinn-Ying Ho* (2013, Mar). FRKAS: Knowledge Acquisition Using a Fuzzy Rule Base Approach to Insight of DNA-Binding Domains/Proteins. Protein & Peptide Letters. (SCI, 205/290,BIOCHEMISTRY & MOLECULAR BIOLOGY). 本人為通訊作者.
  41. Chyn Liaw, Chun-Wei Tung and Shinn-Ying Ho* (2013, Jan). Prediction and Analysis of Antibody Amyloidogenesis from Sequences. PLoS ONE, No 8, e5235. (SCI, 12/85,BIOLOGY). NSC 101-2627-B-009-003. 本人為通訊作者.
  42. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho* (2013, Jan). Predicting Television Ratings and Its Application to Taiwan Cable TV Channels. Proceedings of the 2nd International Symposium on Computer, Communication, Control and Automation, 68, 189-193. 本人為通訊作者.
  43. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho* (2013). An Efficient Sampling Method for Television Ratings and its Application to Taiwan Cable TV Channels. Journal of Applied Sciences, 13(13), 2602-2605. 本人為通訊作者.
  44. Hui-Ling Huang, Hua-Chin Lee, Yi-Fan Liou, Ming-Che Li, and Shinn-Ying Ho* (2012, Dec). Designing predictors of carbohydrate-binding proteins using informative physicochemical properties. Bioinformatics and Biomedical Technology, 29, 155-160. 本人為通訊作者.
  45. Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen and Shinn-Ying Ho* (2012, Dec). Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition. BMC Bioinformatics, Vol. 13 Supplement 17, S3. (SCI, 7/47, MATHEMATICAL & COMPUTATIONAL BIOLOGY). 本人為通訊作者.
  46. Ching-Tai Chen, Hung-Pin Peng, Jhih-Wei Jian, Keng-Chang Tsai, Jeng-Yih Chang, Ei-Wen Yang, Jun-Bo Chen, Shinn-Ying Ho, Wen-Lian Hsu, An-Suei Yang* (2012, Jun). Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces. PLoS ONE. (SCI, 7/56, MULTIDISCIPLINARY SCIENCES).
  47. Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher* and Shinn-Ying Ho* (2011, Nov). POPISK: T-cell reactivity prediction using support vector machines and string kernels. BMC Bioinformatics, 12:446. (SCI, 7/47, MATHEMATICAL & COMPUTATIONAL BIOLOGY). NSC 100-2221-E-009-143. 本人為通訊作者.
  48. Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tzai-Wen Chiu, Phasit Charoenkwan1 and Eric Hwang* (2011, Jun). NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery. BMC Bioinformatics, 12. (SCI, 7/47, MATHEMATICAL & COMPUTATIONAL BIOLOGY). NSC 98-2311-B-009-001-MY2. 本人為第一作者.
  49. Hui-Lin Huang, I-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu, Wen-Lin Huang, Shinn-Jang Ho, and Shinn-Ying Ho* (2011, Jan). Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. BMC Bioinformatics, vol.12 (Suppl 1). (SCI, 7/47, MATHEMATICAL & COMPUTATIONAL BIOLOGY). NSC 99-2627-B-009-002. 本人為通訊作者.
  50. Hsin-Nan Lin, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu* (2010, Dec). Improving protein secondary structure prediction based on short subsequences with local structure similarity. BMC Genomics, 11(Suppl 4):S4. (SCI, 21/160, BIOTECHNOLOGY & APPLIED MICROBIOLOGY).
  51. Chiung-Hui Hung, Hui-Ling Huang, Kai-Ti Hsu, Shinn-Jang Ho, Shinn-Ying Ho* (2010, Jul). Prediction of non-classical secreted proteins using informative physicochemical properties. Interdiscip Sci Comput Life Sci, Volume 2, Number 3, p. 263-270. (其它). NSC 97-2627-B-009-005. 本人為通訊作者.
  52. Shinn-Ying Ho*,Wen-Lin Huang, Chun-Wei Tung and Hui-Ling Huang (2009, Nov). Predicting protein subnuclear localization using GO-amino-acid composition features. BioSystems, vol.98,issue 2,pp73-79. (SCI, 38/83, BIOLOGY). 本人為第一作者.
  53. Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho and Wen-Lian Hsu* (2009, Oct). Protein subcellular localization prediction of eukaryotes using a knowledge-based approach. BMC BIOINFORMATICS, (Suppl 15):S8. (SCI, 7/47, MATHEMATICAL & COMPUTATIONAL BIOLOGY).
  54. Chia-Ta Tsai, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, and Shinn-Ying Ho* (2009, Sep). Virulent-GO: Prediction of Virulent Proteins in Bacterial Pathogens Utilizing Gene Ontology Terms. International Journal of Biological and Life Sciences, vol 5:4, pp.159-166. (其它). NSC 97-2627-B-009-005. 本人為通訊作者.
  55. Kai-Ti Hsu, Hui-Ling Huang, Chun-Wei Tung, Yi-Hsiung Chen, and Shinn-Ying Ho* (2009, Sep). Analysis of physicochemical properties on prediction of R5, X4 and R5X4 HIV-1 coreceptor usage. International Journal of Biological and Life Sciences, vol5:4, pp.208-215. (其它). NSC 97-2627-B-009-005. 本人為通訊作者.
  56. Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, and Hsien-Da Huang* (2009, Jan). sRNAMap: Genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Research, vol. 37, Database issue. (SCI, 27/290, BIOCHEMISTRY & MOLECULAR BIOLOGY).
  57. C.-W. Tung, S.-Y. Ho* (2008, Jul). Computational identification of ubiquitylation sites from protein sequences. BMC Bioinformatics, 9:310. (SCI). NSC 96-2627-B-009-002.
  58. M.-H. Hung, S.-J. Ho, L.-S. Shu, S.-F. Hwang, S.-Y. Ho* (2008, Mar). A Novel Intelligent Multiobjective Simulated Annealing Algorithm for Designing Robust PID Controllers. IEEE Trans. Systems, Man, and Cybernetics Part A - Systems and Humans, Volume: 38 Issue:2, pp. 319-330. (SCI).
  59. S.-Y. Ho, H.-S. Lin, W.-H. Liauh, S.-J. Ho (2008, Mar). OPSO: Orthogonal Particle Swarm Optimization and Its Application to Task Assignment Problems. IEEE Trans. Systems, Man, and Cybernetics Part A - Systems and Humans, Volume: 38 Issue:2 . (SCI).
  60. W.-L. Huang, C.-W. Tung, S.-W. Ho, S.-F. Hwang and S.-Y. Ho* (2008, Feb). ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. BMC Bioinformatics, 9, P80. (SCI). NSC 96-2628-E-009-141-MY3. 本人為通訊作者.
  61. S.-Y. Ho*, C.-H. Hsieh, F.-C. Yu, and H.-L. Huang, (2007, Oct). An intelligent two-stage evolutionary algorithm for dynamic pathway identification from gene expression profiles. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4, P.648-P.660. (SCI). NSC 95-2221-E-009-116. 本人為第一作者、通訊作者.
  62. W.-L. Huang, H.-M. Chen, S.-F. Hwang, S.-Y. Ho* (2007, Sep). Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method. BioSystems, Volume 90, Issue 2, P. 405-413 . (SCI). NSC 95-2627-B-009-002.
  63. H.-L. Huang, C.-C. Lee, S.-Y. Ho* (2007, Jul). Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers. BioSystems, vol. 90, issue 1, p. 78-86. (SCI). NSC 95-2221-E-009-116.
  64. S.-Y. Ho*, F.-C. Yu, C.-Y. Chang, and H.-L. Huang (2007, Jun). Design of accurate predictors for DNA-binding sites in proteins. BioSystems, vol 90, issue 1,pp 234-241. (SCI). NSC 94-2627-B-009-003.
  65. L.-T. Huang, M.M. Gromiha*, S.-Y. Ho (2007, Mar). iPTREE-STAB: Interpretable Decision Tree Based Method for Predicting Protein Stability Changes upon Mutations. Bioinformatics, Vol. 23 no. 10 2007, P. 1292–1293. (SCI).
  66. L.-T. Huang, M.M. Gromiha, S.-Y. Ho* (2007, Mar). Sequence Analysis and Rule Development of Predicting Protein Stability Change upon Mutation Using Decision Tree Model. Journal of Molecular Modeling, Volume 13, Number 8, 879-890. (SCI).
  67. C.-W. Tung and S.-Y. Ho* (2007, Feb). POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties. Bioinformatics, vol. 23, issue 8, P. 942-949. (SCI). NSC 94-2627-B-009-003.
  68. L.-T. Huang, K. Saraboji, S.-Y. Ho, S.-F. Hwang, M.N. Ponnuswamy, and M.M. Gromiha* (2007, Feb). Prediction of protein mutant stability using classification and regression tool. Biophysical Chemistry, Volume 125, Issues 2-3, P. 462-470 . (SCI). NSC 95-2627-B-009-002.
  69. W.-L. Huang, C.-W. Tung, H.-L. Huang, S.-F. Hwang, S.-Y. Ho* (2007, Jan). ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. BioSystems, vol. 90, issue 2, pp. 571-581. (SCI). NSC 94-2627-B-009-003.
  70. H.-M. Chen, B.-F. Liu, H.-L. Huang, S.-F. Hwang, and S.-Y. Ho*, (2006, Nov). SODOCK: Swarm Optimization for Highly Flexible Protein-Ligand Docking. Journal of Computational Chemistry. (SCI). NSC 95-2627-B-009-002. 本人為通訊作者.
  71. S.-J. Ho, Wen-Yuan Ku, Jun-Wun Jou, M.-H. Hung, S.-Y. Ho* (2006, Nov). Intelligent Particle Swarm Optimization in Multi-objective Problems. Lecture Notes in Artificial Intelligence, LNAI 3918, pp. 790-800. (SCI).
  72. S.-Y. Ho*, C.-H. Hsieh, K.-W. Chen, H.-L. Huang, H.-M. Chen, and S.-J. Ho (2006, Nov). Scoring method for tumor prediction from microarray data using an evolutionary fuzzy classifier. Lecture Notes in Artificial Intelligence, LNAI 3918, pp. 520-529. (SCI). NSC 95-2221-E-009-116.
  73. L.-T. Huang, M.M. Gromiha, S.-F. Hwang, and S.-Y. Ho* (2006, Sep). Knowledge Acquisition and Development of Accurate Rules for Predicting Protein Stability Changes. Computational Biology and Chemistry, P.408-P.415. (SCI). 本人為通訊作者.
  74. S.-J. Ho, L.-S. Shu, and S.-Y. Ho* (2006, Jun). Optimizing Fuzzy Neural Networks for Tuning PID Controllers Using an Orthogonal Simulated Annealing Algorithm OSA. IEEE Trans. Fuzzy Systems, P.421-P.434. (SCI). 本人為通訊作者.
  75. S.-Y. Ho*, C.-H. Hsieh, H.-M. Chen, and H.-L. Huang (2006, Jan). Interpretable gene expression classifier with an accurate and compact fuzzy rule base for microarray data analysis. BioSystems, vol. 85, pp. 165-176. (SCI). NSC 95-2221-E-009-116.
  76. J.-H. Chen, S.-Y. Ho*, (2005, Nov). A Novel Approach to Production Planning of Flexible Manufacturing Systems Using an Efficient Multi-Objective Genetic Algorithm. International Journal of Machine Tools and Manufacture, vol. 45, issues 7-8, pp. 949-957. (SCI).
  77. S.-J. Ho, S.-Y. Ho, and L.-S. Shu (2005, Nov). Designing Structure-Specified Mixed H2/H Optimal Controllers Using an Intelligent Genetic Algorithm IGA. IEEE Trans. Control System Technology, VOL. 13, NO. 6, p.1119-p.1124. (SCI). 本人為通訊作者.
  78. J.-H. Chen, H.-M. Chen, S.-Y. Ho* (2005, Jul). Design of Nearest Neighbor Classifier: Multi-objective Approach. International Journal of Approximate Reasoning, volume 40, issues 1-2, pp. 3-22. (SCI).
  79. J.-H. Chen and S.-Y. Ho (2005, Jun). A Novel Approach to Production Planning of Flexible Manufacturing Systems Using an Efficient Multi-Objective Genetic Algorithm. International Journal of Machine Tools and Manufacture, vol. 45, issues 7-8, pp. 949-957. (SCI). 本人為通訊作者.
  80. K.-C. Lee*, S.-J. Ho and S.-Y. Ho (2005, Jan). Accurate Estimation of Surface Roughness from Texture Features of the Surface Image Using an Adaptive Neuro-Fuzzy Inference System. Precision Engineering, Volume 29, Issue 1, Pages 95-100 . (SCI).
  81. S.-Y. Ho, L.-S. Shu, and J.-H. Chen (2004, Dec). Intelligent Evolutionary Algorithms for Large Parameter Optimization Problems. IEEE Trans. Evolutionary Computation, VOL. 8, NO. 6, p.522-p.541. (SCI). 本人為第一作者、通訊作者.
  82. Shinn-Ying Ho*, S.-J. Ho, and Y.-K. Lin (2004, Aug). An Orthogonal Simulated Annealing Algorithm for Large Floorplanning Problems. IEEE Trans. VLSI systems, vol. 12, no. 8, pp. 874-876. (SCI).
  83. L.-S. Shu, Shinn-Ying Ho* and S.-J. Ho (2004, Jul). A Novel Orthogonal Simulated Annealing Algorithm for Optimization of Electromagnetic Problems. IEEE Trans. Magnetics, vol. 40, no. 4, pp. 1791-1795. (SCI).
  84. Shinn-Ying Ho*, H.-M. Chen, S.-J. Ho, and T.-K. Chen (2004, Apr). Design of Accurate Classifiers with a Compact Fuzzy-Rule Base Using an Evolutionary Scatter Partition of Feature Space. IEEE Trans. Systems, Man, and Cybernetics─Part B, vol. 34, no. 2, pp. 1031-1044,. (SCI).
  85. Shinn-Ying Ho*, Jian-Hung Chen, and Meng-Hsun Huang (2004, Feb). Inheritable Genetic Algorithm for Biobjective 0/1 Combinatorial Optimization Problems and its Applications. IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART B: CYBERNETICS,, VOL 34. NO.1 609-620. (SCI).
  86. H.-L. Huang and S.-Y. Ho (2003, May). Mesh Optimization for Surface Approximation Using an Efficient Coarse-to-Fine Evolutionary Algorithm. Pattern Recognition, 36, P.1065-P.1081. (SCI). 本人為通訊作者.
  87. S.-J. Ho, Shinn-Ying Ho*, and L.-S. Shu200409月)。OSA: Orthogonal Simulated Annealing Algorithm and Its Application to Designing Mixed H2/H Optimal ControllersIEEE Trans. Systems, Man, and Cybernetics─Part A, Systems and Humansvol. 34, no. 5, pp. 588-600。(SCI)。

 

專書論文

  1. Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, and Shinn-Ying Ho*. Prediction of Mouse Senescence From HE-Stain Liver Images Using An Ensemble SVM Classifier. Intelligent Information and Database Systems, Lecture Notes in Computer Science (ISBN: 978-3-642-36543-0). Springer. Mar, 2013: Volume 7803, pp. 325-334.

 

研討會論文

  1. Tzu-Yun Lo, Pei-Yin Wei, Chia-Heng Yen, Jiing-Feng Lirng, Muh-Hwa Yang, Pen-Yuan Chu, and Shinn-Ying Ho, “Prediction of Metastasis in Head and Neck Cancer from Computed Tomography Images” Proceedings of the 2018 International Conference on Robotics and Artificial Intelligence. ACM, 2018.
  2. Shinn-Ying Ho, Yi-Pin Chiu, Yu-Shan Cai, Ding-Wei Chang, (2018, July), “Novel Prediction Method for Early Detection of Diabetes Mellitus by Questionnaire” presented at 20th Asia Pacific Diabetes Conference, Australia.
  3. Yerukala Sathipati Srinivasulu, Hui-Ling Huang and Shinn-Ying Ho (2016, Dec), “Estimating survival time of patients with glioblastoma multiforme and characterization of the identified microRNA signatures”, presented at International Conference on Bioinformatics 2016(InCoB 2016), Biopolis, The Matrix, Singapore.
  4. Toma Vasylenko, Yi-Fan Liou,Po-Chin Chiou, Hsiao-Wei Chu, Yung-Sung Lai, Yu-Ling Chou, Hui-Ling Huang and Shinn-Ying Ho (2016, Dec), “SCMBYK: prediction and characterization of bacterial tyrosinekinases based on propensity scores of dipeptides.”, presented at International Conference on Bioinformatics 2016(InCoB 2016), Biopolis, The Matrix, Singapore.
  5. Yi-Fan Liou, Hui-Ling Huang, and Shinn-Ying Ho (2016, Dec), “A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area.”, presented at International Conference on Bioinformatics 2016(InCoB 2016), Biopolis, The Matrix, Singapore.
  6. Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang, Jui-Yun Wu, Ya-Ting Chuang, Shinn-Ying Ho* (2014, Dec). Statistical Analysis and Classification of EEG-based Attention Network Task Using Optimized Feature Selection. IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2014), Orlando, USA. NSC 102-2911-I-009-10 本人為通訊作者.
  7. Hui-Ling Huang, Hua-Chin Lee, Phasit Charoenkwan, Wen-Lin Huang, Li-Sun Shu and Shinn-Ying Ho* (2014, Aug). Interpretable knowledge acquisition for predicting bioluminescent proteins using an evolutionary fuzzy classifier method. The Eighth International Conference on Advanced Engineering Computing and Applications in Sciences (ADVCOMP 2014), Rome, Italy. NSC 102-2221-E-009-169. 本人為通訊作者.
  8. Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamala Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Y. H. Chen, Hui-Ling Huang* and Shinn-Ying Ho* (2014, Jul). SCMHBP: Prediction and analysis of heme binding proteins using propensity scores of dipeptides. International Conference on Bioinformatics 2014 (InCoB 2014), Sydney, Australia. 本人為通訊作者.
  9. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho* (2013, Dec). Predicting Television Ratings and Its Application to Taiwan Cable TV Channels. 2nd International Symposium on Computer, Communication, Control and Automation (3CA 2013). 本人為通訊作者.
  10. Hui-Ling Huang, Hua-Chin Lee, Shih-Chung Lai, Tse-Ming Tsai, Shih-Chun Chou, Bo-fu Liu, Yun-Ju Yin, Hong-An Chen, and Shinn-Ying Ho* (2013, Sep). An Efficient Sampling Method for Television Ratings and Its Application to Taiwan Cable TV Channels. The 3rd International Conference on Computer Science and Logistics Engineering (ICCSLE2013), Hong Kong. 本人為通訊作者.
  11. Phasit Charoenkwan, Eric Hwang, Robert W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang*, Shinn-Ying Ho* (2013, Sep). HCS-Neurons: Identifying phenotypic changes in multi-neuron images upon drug treatments of highcontent screening. 12th International Conference on Bioinformatics (InCoB 2013), Taicang, China. 本人為通訊作者.
  12. Hua-Chin Lee ,Li-Wei Ko, Kuan-Lin Lai, Hui-Ling Huang, Meng-Shue Song, Wen-Liang Chen, Shuu-Jiun Wang, Shinn-Ying Ho* (2013, Aug). Prediction of Resting-state EEG Using High-dimensional Patterns. 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand. 本人為通訊作者.
  13. Hui-ling Huang, Yi-fan Liou, Hua-chin Lee, Phasit Charoenkwan,Chao-di Chang, Yerukala Sathipati Srinivasulu, Wen-liang Chen, Tamara Vasylenko, Shinn-ying Ho* (2013, Aug). Predicting and Analyzing Lipid-Binding Proteins Using an Efficient Physicochemical Property Mining Method. 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand. 本人為通訊作者.
  14. Wen-Lin Huang, Chyn Liaw, Chia-Ta Tsai,and Shinn-Ying Ho* (2013, Aug). Identification and Analysis of Single- and Multiple-region Mitotic Protein Complexes by Grouping Gene Ontology Terms. 2013 4th International Conference on Information Technology for Manufacturing Systems (ITMS 2013), Auckland, New Zealand. 本人為通訊作者.
  15. Chi-Lan Yang**, Hua-Chin Lee**, Chung-Chiang Chen, Tzyy-Ping Jung, Shinn-Ying Ho, Li-Wei Ko* (2013, Jul). Working Memory Performance and Brain Oscillations under Stress. 15th International Conference on Human-Computer Interaction (HCI International 2013), Las Vegas, USA.
  16. Hui-Ling Huang, Phasit Charoenkwan, Y. S. Srinivasulu, Hua-Chin Lee and Shinn-Ying Ho* (2013, Apr). Designing predictors of halophilic and non-halophilc proteins using support vector machines. IEEE Symposium Series on Computational Intelligence, Singapore. 本人為通訊作者.
  17. Li-Wei Ko**, Hua-Chin Lee**, Shu-Fang Tsai, Tsung-Chin Shih, Ya-Ting Chuang, Hui-Ling Huang, Shinn-Ying Ho*,and Chin-Teng Lin* (2013, Apr). EEG-based Motion Sickness Classification system with Genetic Feature Selection. IEEE Symposium Series on Computational Intelligence 2013, Singapore. 本人為通訊作者.
  18. Watshara Shoombuatong, Phasit Charoenkwan, Hui-Ling Huang, Hua-Chin Lee, Jeerayut Chaijaruwanich and Shinn-Ying Ho* (2013, Apr). Predicting Protein Crystallization Using a Simple Scoring Card Method. IEEE Symposium Series on Computational Intelligence, Singapore. 本人為通訊作者.
  19. Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, and Shinn-Ying Ho* (2013, Mar). Prediction of Mouse Senescence From HE-Stain Liver Images Using An Ensemble SVM Classifier. 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), Kuala Lumpur, Malaysia. 本人為通訊作者.
  20. Chin-Teng Lin, Shu-Fang Tsai, Hua-Chin Lee, Hui-Ling Huang, Shinn-Ying Ho* and Li-Wei Ko* (2012, Jun). Motion Sickness Estimation System. IEEE International Joint Conference on Neural Networks, Brisbane, Australia. 本人為通訊作者.
  21. Hua-Chin Lee, Yi-Fan Liou, Phasit Charoenkwan, Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho, and Hui-Ling Huang* (2012, May). Prediction of Carbohydrate-Binding Proteins Using a Scoring Card Method. The 6th International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2012). 本人為通訊作者.
  22. Hui-Ling Huang, Yi-Fan Liou, Hua-Chin Lee, Wen-Lin Huang, and Shinn-Ying Ho* (2012, May). Designing predictors of bioluminescence proteins using an efficient physicochemical property mining method. The 6th International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2012). 本人為通訊作者.
  23. Hui-Ling Huang, Hua-Chin Lee, Yi-Fan Liou, Ming-Che Li, and Shinn-Ying Ho* (2012, Apr). Designing predictors of carbohydrate-binding proteins using informative physicochemical properties. 2012 4th International Conference on Bioinformatics and Biomedical Technology (ICBBT 2012), Singapore. 本人為通訊作者.
  24. Hui-Ling Huang, Shiao-Bang Chang, Yi-Hsiung Chen, and Shinn-Ying Ho* (2011, Dec). Optimization approach to estimation of kinetic parameters for modelling metabolic pathways of muscle glycogenolysis. The 22nd International Conference on Genome Informatics, Korea. 本人為通訊作者.
  25. Hui-Ling Huang,Yu-Hsiang Lin, Wen-Lin Huang and Shinn-Ying Ho* (2011, Dec). Intelligent triple-objective genetic algorithm for selecting informative Tag SNPs. The 22nd International Conference on Genome Informatics, Korea. 本人為通訊作者.
  26. Li-Sun Shu, Hui-Ling Huang, Shinn-Jang Ho, Shinn-Ying Ho* (2011, Nov). Establishing large-scale gene regulatory networks using a gene-knowledge-embedded evolutionary computation method. IEEE International Conference on Computer Science and Automation Engineering, Shanghai, China. 本人為通訊作者.
  27. Hui-Ling Huang, Fang-Lin Chang, Shinn-Jang Ho, Li-Sun Shu, and Shinn-Ying Ho* (2011, Jun). Interpretable knowledge acquisition for predicting DNA-binding domains using an evolutionary fuzzy classifier method. IEEE International Conference on Computer Science and Automation Engineering, Shanghai, China. 本人為通訊作者.
  28. Wen-Lin Huang, Chyn Liaw and Shinn-Ying Ho* (2011, Jun). Predicting non-classical secretory proteins by using Gene Ontology terms and physicochemical properties. IEEE International Conference on Computer Science and Automation Engineering, Shanghai, China. 本人為通訊作者.
  29. Hui-Lin Huang, I-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu, Wen-Lin Huang, Shinn-Jang Ho, and Shinn-Ying Ho* (2011, Jan). Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. The Asia Pacific Bioinformatics Conference, Jan, Korea. 本人為通訊作者.
  30. Chun-Wei Tung, Chyn Liaw, Shinn-Jang Ho, Shinn-Ying Ho* (2010, May). Prediction of protein subchloroplast locations using Random Forests. International Conference on Computational Biology. 本人為通訊作者.
  31. Chyn Liaw, Chun-Wei Tung, Shinn-Jang Ho, Shinn-Ying Ho* (2010, May). Sequence-based Prediction Of Gamma-turn Types Using A Physicochemical Property-based Decision Tree Method. International Conference on Computational Biology. 本人為通訊作者.
  32. Wen-Lin Huang ,Chun-Wei Tung ,Shinn-Ying Ho* (2010, Feb). Human Pol II promoter prediction by using nucleotide property composition features. The International Symposium on Biocomputing (ISB). 本人為通訊作者.
  33. Yih-Jer Lin, Chia-Ta Tsai, Hui-Ling Huang, Shinn-Ying Ho* (2010, Feb). Designing predictors of DNA-binding proteins using an efficient physicochemical property mining method. The 2nd International Conference on Computer and Automation Engineering (ICCAE2010). 本人為通訊作者.
  34. Chiung-Hui Hung, Hui-Ling Huang, Kai-Ti Hsu, Shinn-Jang Ho and Shinn-Ying Ho* (2009, Oct). Prediction of non-classical secreted proteins using informative physicochemical properties. The International Conference on Computational and Systems Biology (ICBBA) . 本人為通訊作者.
  35. Chia-Ta Tsai, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, and Shinn-Ying Ho* (2009, May). Virulent-GO: Prediction of virulent proteins inbacterial pathogens utilizing Gene Ontology terms. International Conference on Bioinformatics and Bioengineering (ICBB). 本人為通訊作者.
  36. Kai-Ti Hsu, Hui-Ling Huang, Chun-Wei Tung, Yi-Hsiung Chen, and Shinn-Ying Ho* (2009, May). Analysis of physicochemical properties on prediction of R5, X4 and R5X4 HIV-1 coreceptor usage. International Conference on Bioinformatics and Bioengineering (ICBB). 本人為通訊作者.
  37. W.-L. Huang, C.-W. Tung, S.-W. Ho, and S.-Y. Ho* (2008, Sep). ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. (CIBCB).
  38. H.-L. Huang, K.-W. Chen, S.-J. Ho, S.-Y. Ho* (2008, Jun). Inferring S-system Models of Genetic Networks from a Time-series Real Data Set of Gene Expression Profiles. IEEE Congress on Evolutionary Computation 2008.
  39. C.-W. Tung and S.-Y. Ho* (2007, Dec). Mining physicochemical properties for predicting immunogenicity of MHC class II binding peptides. 18th International Conference on Genome Informatics.
  40. Y.-H. Chen and S.-Y. Ho* (2007, Nov). GRNet: An efficient and robust evolutionary method for reconstructing gene regulatory networks. 18th International Conference on Genome Informatics.
  41. S.-J. Ho, C.-Y. Chang, L.-T. Huang, S.-F. Hwang, and S.-Y. Ho* (2007, Oct). Acquisition of Rule-based Knowledge for Analyzing DNA-binding Sites in Proteins. In proc. of the 2nd International Conf. on Scalable Information Systems .
  42. H.-L. Huang, Y.-H. Chen, D. D. Koeberl, and S.-Y. Ho* (2007, Apr). Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data. 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.
  43. S.-J. Ho, W.-Y. Ku, J.-W. Jou, M.-H. Hung, and S.-Y. Ho* (2006, Apr). Intelligent Particle Swarm Optimization in Multi-objective Problems. The 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD).
  44. S.-Y. Ho, C.-H. Hsieh, K.-W. Chen, H.-L. Huang, H.-M. Chen (2006, Apr). Scoring method for tumor prediction from microarray data using an evolutionary fuzzy classifier. The 10th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD).